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TypingError: Failed in nopython mode pipeline (step: nopython frontend)



The Next CEO of Stack OverflowHow to use a decimal range() step value?Simple sum-function in Python with numba doesn't computePython NumbaPro GPU vectorization with Error : TypingError: Failed at nopython (nopython frontend)Why is my python app continues to get a 500 Internal Server Error?Is it possible to Cluster Non-float data in KMeans in Python(Scikit-Learn)?Error: Installing SciPy in Windows 10 64bit using pip (Python 3.5.2)ValueError("Cannot evaluate tensor using `eval()`:Error when working with flask sqlalchemy.exc.IntegrityError: (sqlite3.IntegrityError) UNIQUE constraint failed*** numba.errors.TypingError: Failed in nopython mode pipeline (step: nopython frontend)How to fix “NotImplementedError” when trying to run Hydrogen in Atom










0















I am trying to write my first function using numba jit, I have a pandas dataframe that I need to iterate through and find the root mean square for each 350 points, since the for loop of python is quite slow I decided to try numba jit, the code is:



@jit(nopython=True)
def find_rms(data, length):
res = []
for i in range(length, len(data)):
interval = np.array(data[i-length:i])
interval =np.power(interval, 2)
sum = interval.sum()
resI = sum/length
resI = np.sqrt(res)
res.appennd(resI)
return res

mydf = np.array(df.iloc[:]['c0'], dtype=np.float64)
df.iloc[350:]['rms'] = find_rms(mydf, 350)


I read somewhere thad I need to specify datatypes, therefore I wrote "dtype = np.float64" but I still get the error as:



---------------------------------------------------------------------------
TypingError Traceback (most recent call last)
<ipython-input-39-4d388f72efdc> in <module>
----> 1 df.iloc[350:]['rms'] = find_rms(mydf, 350.0)

c:users1appdatalocalprogramspythonpython35libsite-packagesnumbadispatcher.py in _compile_for_args(self, *args, **kws)
346 e.patch_message(msg)
347
--> 348 error_rewrite(e, 'typing')
349 except errors.UnsupportedError as e:
350 # Something unsupported is present in the user code, add help info

c:users1appdatalocalprogramspythonpython35libsite-packagesnumbadispatcher.py in error_rewrite(e, issue_type)
313 raise e
314 else:
--> 315 reraise(type(e), e, None)
316
317 argtypes = []

c:users1appdatalocalprogramspythonpython35libsite-packagesnumbasix.py in reraise(tp, value, tb)
656 value = tp()
657 if value.__traceback__ is not tb:
--> 658 raise value.with_traceback(tb)
659 raise value
660

TypingError: Failed in nopython mode pipeline (step: nopython frontend)
Invalid use of Function(<built-in function array>) with argument(s) of type(s): (array(float64, 1d, C))
* parameterized
In definition 0:
TypingError: array(float64, 1d, C) not allowed in a homogeneous sequence
raised from c:users1appdatalocalprogramspythonpython35libsite-packagesnumbatypingnpydecl.py:463
In definition 1:
TypingError: array(float64, 1d, C) not allowed in a homogeneous sequence
raised from c:users1appdatalocalprogramspythonpython35libsite-packagesnumbatypingnpydecl.py:463
This error is usually caused by passing an argument of a type that is unsupported by the named function.
[1] During: resolving callee type: Function(<built-in function array>)
[2] During: typing of call at <ipython-input-34-edd252715b2d> (5)


File "<ipython-input-34-edd252715b2d>", line 5:
def find_rms(data, length):
<source elided>
for i in range(length, len(data)):
interval = np.array(data[i-length:i])
^

This is not usually a problem with Numba itself but instead often caused by
the use of unsupported features or an issue in resolving types.

To see Python/NumPy features supported by the latest release of Numba visit:
http://numba.pydata.org/numba-doc/dev/reference/pysupported.html
and
http://numba.pydata.org/numba-doc/dev/reference/numpysupported.html

For more information about typing errors and how to debug them visit:
http://numba.pydata.org/numba-doc/latest/user/troubleshoot.html#my-code-doesn-t-compile

If you think your code should work with Numba, please report the error message
and traceback, along with a minimal reproducer at:
https://github.com/numba/numba/issues/new


Does anybody know what the problem is?










share|improve this question






















  • It seems that at some point (as input or an array created later) does not have all it values of the same type. As numba compiles things in C, it can only handle arrays that are populated with a single type of values. Check that the array data fulfills this requirement.

    – Eskapp
    Mar 8 at 19:33















0















I am trying to write my first function using numba jit, I have a pandas dataframe that I need to iterate through and find the root mean square for each 350 points, since the for loop of python is quite slow I decided to try numba jit, the code is:



@jit(nopython=True)
def find_rms(data, length):
res = []
for i in range(length, len(data)):
interval = np.array(data[i-length:i])
interval =np.power(interval, 2)
sum = interval.sum()
resI = sum/length
resI = np.sqrt(res)
res.appennd(resI)
return res

mydf = np.array(df.iloc[:]['c0'], dtype=np.float64)
df.iloc[350:]['rms'] = find_rms(mydf, 350)


I read somewhere thad I need to specify datatypes, therefore I wrote "dtype = np.float64" but I still get the error as:



---------------------------------------------------------------------------
TypingError Traceback (most recent call last)
<ipython-input-39-4d388f72efdc> in <module>
----> 1 df.iloc[350:]['rms'] = find_rms(mydf, 350.0)

c:users1appdatalocalprogramspythonpython35libsite-packagesnumbadispatcher.py in _compile_for_args(self, *args, **kws)
346 e.patch_message(msg)
347
--> 348 error_rewrite(e, 'typing')
349 except errors.UnsupportedError as e:
350 # Something unsupported is present in the user code, add help info

c:users1appdatalocalprogramspythonpython35libsite-packagesnumbadispatcher.py in error_rewrite(e, issue_type)
313 raise e
314 else:
--> 315 reraise(type(e), e, None)
316
317 argtypes = []

c:users1appdatalocalprogramspythonpython35libsite-packagesnumbasix.py in reraise(tp, value, tb)
656 value = tp()
657 if value.__traceback__ is not tb:
--> 658 raise value.with_traceback(tb)
659 raise value
660

TypingError: Failed in nopython mode pipeline (step: nopython frontend)
Invalid use of Function(<built-in function array>) with argument(s) of type(s): (array(float64, 1d, C))
* parameterized
In definition 0:
TypingError: array(float64, 1d, C) not allowed in a homogeneous sequence
raised from c:users1appdatalocalprogramspythonpython35libsite-packagesnumbatypingnpydecl.py:463
In definition 1:
TypingError: array(float64, 1d, C) not allowed in a homogeneous sequence
raised from c:users1appdatalocalprogramspythonpython35libsite-packagesnumbatypingnpydecl.py:463
This error is usually caused by passing an argument of a type that is unsupported by the named function.
[1] During: resolving callee type: Function(<built-in function array>)
[2] During: typing of call at <ipython-input-34-edd252715b2d> (5)


File "<ipython-input-34-edd252715b2d>", line 5:
def find_rms(data, length):
<source elided>
for i in range(length, len(data)):
interval = np.array(data[i-length:i])
^

This is not usually a problem with Numba itself but instead often caused by
the use of unsupported features or an issue in resolving types.

To see Python/NumPy features supported by the latest release of Numba visit:
http://numba.pydata.org/numba-doc/dev/reference/pysupported.html
and
http://numba.pydata.org/numba-doc/dev/reference/numpysupported.html

For more information about typing errors and how to debug them visit:
http://numba.pydata.org/numba-doc/latest/user/troubleshoot.html#my-code-doesn-t-compile

If you think your code should work with Numba, please report the error message
and traceback, along with a minimal reproducer at:
https://github.com/numba/numba/issues/new


Does anybody know what the problem is?










share|improve this question






















  • It seems that at some point (as input or an array created later) does not have all it values of the same type. As numba compiles things in C, it can only handle arrays that are populated with a single type of values. Check that the array data fulfills this requirement.

    – Eskapp
    Mar 8 at 19:33













0












0








0








I am trying to write my first function using numba jit, I have a pandas dataframe that I need to iterate through and find the root mean square for each 350 points, since the for loop of python is quite slow I decided to try numba jit, the code is:



@jit(nopython=True)
def find_rms(data, length):
res = []
for i in range(length, len(data)):
interval = np.array(data[i-length:i])
interval =np.power(interval, 2)
sum = interval.sum()
resI = sum/length
resI = np.sqrt(res)
res.appennd(resI)
return res

mydf = np.array(df.iloc[:]['c0'], dtype=np.float64)
df.iloc[350:]['rms'] = find_rms(mydf, 350)


I read somewhere thad I need to specify datatypes, therefore I wrote "dtype = np.float64" but I still get the error as:



---------------------------------------------------------------------------
TypingError Traceback (most recent call last)
<ipython-input-39-4d388f72efdc> in <module>
----> 1 df.iloc[350:]['rms'] = find_rms(mydf, 350.0)

c:users1appdatalocalprogramspythonpython35libsite-packagesnumbadispatcher.py in _compile_for_args(self, *args, **kws)
346 e.patch_message(msg)
347
--> 348 error_rewrite(e, 'typing')
349 except errors.UnsupportedError as e:
350 # Something unsupported is present in the user code, add help info

c:users1appdatalocalprogramspythonpython35libsite-packagesnumbadispatcher.py in error_rewrite(e, issue_type)
313 raise e
314 else:
--> 315 reraise(type(e), e, None)
316
317 argtypes = []

c:users1appdatalocalprogramspythonpython35libsite-packagesnumbasix.py in reraise(tp, value, tb)
656 value = tp()
657 if value.__traceback__ is not tb:
--> 658 raise value.with_traceback(tb)
659 raise value
660

TypingError: Failed in nopython mode pipeline (step: nopython frontend)
Invalid use of Function(<built-in function array>) with argument(s) of type(s): (array(float64, 1d, C))
* parameterized
In definition 0:
TypingError: array(float64, 1d, C) not allowed in a homogeneous sequence
raised from c:users1appdatalocalprogramspythonpython35libsite-packagesnumbatypingnpydecl.py:463
In definition 1:
TypingError: array(float64, 1d, C) not allowed in a homogeneous sequence
raised from c:users1appdatalocalprogramspythonpython35libsite-packagesnumbatypingnpydecl.py:463
This error is usually caused by passing an argument of a type that is unsupported by the named function.
[1] During: resolving callee type: Function(<built-in function array>)
[2] During: typing of call at <ipython-input-34-edd252715b2d> (5)


File "<ipython-input-34-edd252715b2d>", line 5:
def find_rms(data, length):
<source elided>
for i in range(length, len(data)):
interval = np.array(data[i-length:i])
^

This is not usually a problem with Numba itself but instead often caused by
the use of unsupported features or an issue in resolving types.

To see Python/NumPy features supported by the latest release of Numba visit:
http://numba.pydata.org/numba-doc/dev/reference/pysupported.html
and
http://numba.pydata.org/numba-doc/dev/reference/numpysupported.html

For more information about typing errors and how to debug them visit:
http://numba.pydata.org/numba-doc/latest/user/troubleshoot.html#my-code-doesn-t-compile

If you think your code should work with Numba, please report the error message
and traceback, along with a minimal reproducer at:
https://github.com/numba/numba/issues/new


Does anybody know what the problem is?










share|improve this question














I am trying to write my first function using numba jit, I have a pandas dataframe that I need to iterate through and find the root mean square for each 350 points, since the for loop of python is quite slow I decided to try numba jit, the code is:



@jit(nopython=True)
def find_rms(data, length):
res = []
for i in range(length, len(data)):
interval = np.array(data[i-length:i])
interval =np.power(interval, 2)
sum = interval.sum()
resI = sum/length
resI = np.sqrt(res)
res.appennd(resI)
return res

mydf = np.array(df.iloc[:]['c0'], dtype=np.float64)
df.iloc[350:]['rms'] = find_rms(mydf, 350)


I read somewhere thad I need to specify datatypes, therefore I wrote "dtype = np.float64" but I still get the error as:



---------------------------------------------------------------------------
TypingError Traceback (most recent call last)
<ipython-input-39-4d388f72efdc> in <module>
----> 1 df.iloc[350:]['rms'] = find_rms(mydf, 350.0)

c:users1appdatalocalprogramspythonpython35libsite-packagesnumbadispatcher.py in _compile_for_args(self, *args, **kws)
346 e.patch_message(msg)
347
--> 348 error_rewrite(e, 'typing')
349 except errors.UnsupportedError as e:
350 # Something unsupported is present in the user code, add help info

c:users1appdatalocalprogramspythonpython35libsite-packagesnumbadispatcher.py in error_rewrite(e, issue_type)
313 raise e
314 else:
--> 315 reraise(type(e), e, None)
316
317 argtypes = []

c:users1appdatalocalprogramspythonpython35libsite-packagesnumbasix.py in reraise(tp, value, tb)
656 value = tp()
657 if value.__traceback__ is not tb:
--> 658 raise value.with_traceback(tb)
659 raise value
660

TypingError: Failed in nopython mode pipeline (step: nopython frontend)
Invalid use of Function(<built-in function array>) with argument(s) of type(s): (array(float64, 1d, C))
* parameterized
In definition 0:
TypingError: array(float64, 1d, C) not allowed in a homogeneous sequence
raised from c:users1appdatalocalprogramspythonpython35libsite-packagesnumbatypingnpydecl.py:463
In definition 1:
TypingError: array(float64, 1d, C) not allowed in a homogeneous sequence
raised from c:users1appdatalocalprogramspythonpython35libsite-packagesnumbatypingnpydecl.py:463
This error is usually caused by passing an argument of a type that is unsupported by the named function.
[1] During: resolving callee type: Function(<built-in function array>)
[2] During: typing of call at <ipython-input-34-edd252715b2d> (5)


File "<ipython-input-34-edd252715b2d>", line 5:
def find_rms(data, length):
<source elided>
for i in range(length, len(data)):
interval = np.array(data[i-length:i])
^

This is not usually a problem with Numba itself but instead often caused by
the use of unsupported features or an issue in resolving types.

To see Python/NumPy features supported by the latest release of Numba visit:
http://numba.pydata.org/numba-doc/dev/reference/pysupported.html
and
http://numba.pydata.org/numba-doc/dev/reference/numpysupported.html

For more information about typing errors and how to debug them visit:
http://numba.pydata.org/numba-doc/latest/user/troubleshoot.html#my-code-doesn-t-compile

If you think your code should work with Numba, please report the error message
and traceback, along with a minimal reproducer at:
https://github.com/numba/numba/issues/new


Does anybody know what the problem is?







python pandas jit numba






share|improve this question













share|improve this question











share|improve this question




share|improve this question










asked Mar 8 at 14:38









Rehim AlizadehRehim Alizadeh

638




638












  • It seems that at some point (as input or an array created later) does not have all it values of the same type. As numba compiles things in C, it can only handle arrays that are populated with a single type of values. Check that the array data fulfills this requirement.

    – Eskapp
    Mar 8 at 19:33

















  • It seems that at some point (as input or an array created later) does not have all it values of the same type. As numba compiles things in C, it can only handle arrays that are populated with a single type of values. Check that the array data fulfills this requirement.

    – Eskapp
    Mar 8 at 19:33
















It seems that at some point (as input or an array created later) does not have all it values of the same type. As numba compiles things in C, it can only handle arrays that are populated with a single type of values. Check that the array data fulfills this requirement.

– Eskapp
Mar 8 at 19:33





It seems that at some point (as input or an array created later) does not have all it values of the same type. As numba compiles things in C, it can only handle arrays that are populated with a single type of values. Check that the array data fulfills this requirement.

– Eskapp
Mar 8 at 19:33












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