Error when trying to run nosetests in certain directory ~ PyThreadState_Get: no current thread The Next CEO of Stack OverflowHomebrew + Python on mac os x 10.8: Fatal Python error: PyThreadState_Get: no current thread importing mapnikWhat does `Fatal Python error: PyThreadState_Get: no current thread` mean?Find current directory and file's directory'nosetests' not recognized on Windows after being installed and added to PATHfatal error: Python.h: No such file or directorynosetests opens a dialogue box when run after installing noseConda example does not work, it shows newer not older numpy?Can't pip install packages in Anacondaanaconda env couldn't import any of the packagesError with Python after I Uninstalled AnacondaHow could I resume my own python configuration after quiting anacondaAfter installing spyder, conda module is not found

What happened in Rome, when the western empire "fell"?

Should I tutor a student who I know has cheated on their homework?

Would this house-rule that treats advantage as a +1 to the roll instead (and disadvantage as -1) and allows them to stack be balanced?

Is it okay to majorly distort historical facts while writing a fiction story?

Why is my new battery behaving weirdly?

How do I align (1) and (2)?

If Nick Fury and Coulson already knew about aliens (Kree and Skrull) why did they wait until Thor's appearance to start making weapons?

Prepend last line of stdin to entire stdin

How to invert MapIndexed on a ragged structure? How to construct a tree from rules?

RigExpert AA-35 - Interpreting The Information

Is a distribution that is normal, but highly skewed considered Gaussian?

Which one is the true statement?

Why do remote US companies require working in the US?

Find non-case sensitive string in a mixed list of elements?

Is French Guiana a (hard) EU border?

The exact meaning of 'Mom made me a sandwich'

Reference request: Grassmannian and Plucker coordinates in type B, C, D

Rotate a column

Is there always a complete, orthogonal set of unitary matrices?

Does increasing your ability score affect your main stat?

Unclear about dynamic binding

Make solar eclipses exceedingly rare, but still have new moons

Easy to read palindrome checker

What was the first Unix version to run on a microcomputer?



Error when trying to run nosetests in certain directory ~ PyThreadState_Get: no current thread



The Next CEO of Stack OverflowHomebrew + Python on mac os x 10.8: Fatal Python error: PyThreadState_Get: no current thread importing mapnikWhat does `Fatal Python error: PyThreadState_Get: no current thread` mean?Find current directory and file's directory'nosetests' not recognized on Windows after being installed and added to PATHfatal error: Python.h: No such file or directorynosetests opens a dialogue box when run after installing noseConda example does not work, it shows newer not older numpy?Can't pip install packages in Anacondaanaconda env couldn't import any of the packagesError with Python after I Uninstalled AnacondaHow could I resume my own python configuration after quiting anacondaAfter installing spyder, conda module is not found










1















I'm trying to use the /opt/moose/miniconda/bin/python environment (an environment set up by my work) to work on some separate code and am getting an error when trying to use the nose module to run tests.



To walk back where my problem began, I received this error when running:



pip install nose



Could not install packages due to an EnvironmentError: [Errno 13] Permission denied: '/opt/moose/miniconda/lib/python2.7/site-packages/nose'
Consider using the `--user` option or check the permissions.


So I then ran



pip install nose --user



The scripts nosetests and nosetests-2.7 are installed in '~/.local/bin' which is not on PATH.
Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.


So I then added to my ~/.bashrc file



export PATH=$PATH:~/.local/bin



Now when I open a python interpreter in my home directory I can successfully run:



Python 2.7.15 |Anaconda, Inc.| (default, Dec 14 2018, 13:10:39)
[GCC 4.2.1 Compatible Clang 4.0.1 (tags/RELEASE_401/final)] on darwin
Type "help", "copyright", "credits" or "license" for more information.
>>> import nose
>>> nose.main()


----------------------------------------------------------------------
Ran 0 tests in 0.002s


OK


But, when I move to the directory that I want to actually run the tests in, I get:



$ cd Documents/projects/neml
$ python
Python 2.7.15 |Anaconda, Inc.| (default, Dec 14 2018, 13:10:39)
[GCC 4.2.1 Compatible Clang 4.0.1 (tags/RELEASE_401/final)] on darwin
Type "help", "copyright", "credits" or "license" for more information.
>>> import nose
>>> nose.main()

Fatal Python error: PyThreadState_Get: no current thread
Abort trap: 6


Any idea why I'm getting this error, it appears that I am running the same python in both directories. This seems like an environment issue, but if it's not, please point me in the right direction. Thanks.










share|improve this question
























  • Do you have to run tests via interpreter? Or can you use CLI utility? Because when you installed nose, the message says that The scripts nosetests and nosetests-2.7 are installed in '~/.local/bin' Can you try running nosetests command in the Documents/projects/neml?

    – bagljas
    Mar 14 at 15:45












  • @bagljas When I run nosetests I get the same error. In fact, my preferred way is going to be using nosetests

    – dylanjm
    Mar 14 at 16:00











  • I'm not on Mac, so I'm unable to simulate your problem. But it seems you are right, this might be environment related as per stackoverflow.com/a/38976341/7109330 and that answer links to this question stackoverflow.com/q/15678153/7109330 I also found this issue which might be similar to your problem github.com/GalSim-developers/GalSim/issues/546

    – bagljas
    Mar 15 at 8:40











  • Have you tried creating virtualenv and then installing nose within that virtualenv? Doing it this way, you can be sure that your libraries will work with the python interpreter you have in virtualenv.

    – bagljas
    Mar 15 at 8:43











  • I think the installation is not compatible with some other packages in your anaconda environment. It's better to clone the conda environment under your home folder and run conda install nose to install the nose from anaconda.

    – gdlmx
    Mar 17 at 0:50















1















I'm trying to use the /opt/moose/miniconda/bin/python environment (an environment set up by my work) to work on some separate code and am getting an error when trying to use the nose module to run tests.



To walk back where my problem began, I received this error when running:



pip install nose



Could not install packages due to an EnvironmentError: [Errno 13] Permission denied: '/opt/moose/miniconda/lib/python2.7/site-packages/nose'
Consider using the `--user` option or check the permissions.


So I then ran



pip install nose --user



The scripts nosetests and nosetests-2.7 are installed in '~/.local/bin' which is not on PATH.
Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.


So I then added to my ~/.bashrc file



export PATH=$PATH:~/.local/bin



Now when I open a python interpreter in my home directory I can successfully run:



Python 2.7.15 |Anaconda, Inc.| (default, Dec 14 2018, 13:10:39)
[GCC 4.2.1 Compatible Clang 4.0.1 (tags/RELEASE_401/final)] on darwin
Type "help", "copyright", "credits" or "license" for more information.
>>> import nose
>>> nose.main()


----------------------------------------------------------------------
Ran 0 tests in 0.002s


OK


But, when I move to the directory that I want to actually run the tests in, I get:



$ cd Documents/projects/neml
$ python
Python 2.7.15 |Anaconda, Inc.| (default, Dec 14 2018, 13:10:39)
[GCC 4.2.1 Compatible Clang 4.0.1 (tags/RELEASE_401/final)] on darwin
Type "help", "copyright", "credits" or "license" for more information.
>>> import nose
>>> nose.main()

Fatal Python error: PyThreadState_Get: no current thread
Abort trap: 6


Any idea why I'm getting this error, it appears that I am running the same python in both directories. This seems like an environment issue, but if it's not, please point me in the right direction. Thanks.










share|improve this question
























  • Do you have to run tests via interpreter? Or can you use CLI utility? Because when you installed nose, the message says that The scripts nosetests and nosetests-2.7 are installed in '~/.local/bin' Can you try running nosetests command in the Documents/projects/neml?

    – bagljas
    Mar 14 at 15:45












  • @bagljas When I run nosetests I get the same error. In fact, my preferred way is going to be using nosetests

    – dylanjm
    Mar 14 at 16:00











  • I'm not on Mac, so I'm unable to simulate your problem. But it seems you are right, this might be environment related as per stackoverflow.com/a/38976341/7109330 and that answer links to this question stackoverflow.com/q/15678153/7109330 I also found this issue which might be similar to your problem github.com/GalSim-developers/GalSim/issues/546

    – bagljas
    Mar 15 at 8:40











  • Have you tried creating virtualenv and then installing nose within that virtualenv? Doing it this way, you can be sure that your libraries will work with the python interpreter you have in virtualenv.

    – bagljas
    Mar 15 at 8:43











  • I think the installation is not compatible with some other packages in your anaconda environment. It's better to clone the conda environment under your home folder and run conda install nose to install the nose from anaconda.

    – gdlmx
    Mar 17 at 0:50













1












1








1








I'm trying to use the /opt/moose/miniconda/bin/python environment (an environment set up by my work) to work on some separate code and am getting an error when trying to use the nose module to run tests.



To walk back where my problem began, I received this error when running:



pip install nose



Could not install packages due to an EnvironmentError: [Errno 13] Permission denied: '/opt/moose/miniconda/lib/python2.7/site-packages/nose'
Consider using the `--user` option or check the permissions.


So I then ran



pip install nose --user



The scripts nosetests and nosetests-2.7 are installed in '~/.local/bin' which is not on PATH.
Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.


So I then added to my ~/.bashrc file



export PATH=$PATH:~/.local/bin



Now when I open a python interpreter in my home directory I can successfully run:



Python 2.7.15 |Anaconda, Inc.| (default, Dec 14 2018, 13:10:39)
[GCC 4.2.1 Compatible Clang 4.0.1 (tags/RELEASE_401/final)] on darwin
Type "help", "copyright", "credits" or "license" for more information.
>>> import nose
>>> nose.main()


----------------------------------------------------------------------
Ran 0 tests in 0.002s


OK


But, when I move to the directory that I want to actually run the tests in, I get:



$ cd Documents/projects/neml
$ python
Python 2.7.15 |Anaconda, Inc.| (default, Dec 14 2018, 13:10:39)
[GCC 4.2.1 Compatible Clang 4.0.1 (tags/RELEASE_401/final)] on darwin
Type "help", "copyright", "credits" or "license" for more information.
>>> import nose
>>> nose.main()

Fatal Python error: PyThreadState_Get: no current thread
Abort trap: 6


Any idea why I'm getting this error, it appears that I am running the same python in both directories. This seems like an environment issue, but if it's not, please point me in the right direction. Thanks.










share|improve this question
















I'm trying to use the /opt/moose/miniconda/bin/python environment (an environment set up by my work) to work on some separate code and am getting an error when trying to use the nose module to run tests.



To walk back where my problem began, I received this error when running:



pip install nose



Could not install packages due to an EnvironmentError: [Errno 13] Permission denied: '/opt/moose/miniconda/lib/python2.7/site-packages/nose'
Consider using the `--user` option or check the permissions.


So I then ran



pip install nose --user



The scripts nosetests and nosetests-2.7 are installed in '~/.local/bin' which is not on PATH.
Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.


So I then added to my ~/.bashrc file



export PATH=$PATH:~/.local/bin



Now when I open a python interpreter in my home directory I can successfully run:



Python 2.7.15 |Anaconda, Inc.| (default, Dec 14 2018, 13:10:39)
[GCC 4.2.1 Compatible Clang 4.0.1 (tags/RELEASE_401/final)] on darwin
Type "help", "copyright", "credits" or "license" for more information.
>>> import nose
>>> nose.main()


----------------------------------------------------------------------
Ran 0 tests in 0.002s


OK


But, when I move to the directory that I want to actually run the tests in, I get:



$ cd Documents/projects/neml
$ python
Python 2.7.15 |Anaconda, Inc.| (default, Dec 14 2018, 13:10:39)
[GCC 4.2.1 Compatible Clang 4.0.1 (tags/RELEASE_401/final)] on darwin
Type "help", "copyright", "credits" or "license" for more information.
>>> import nose
>>> nose.main()

Fatal Python error: PyThreadState_Get: no current thread
Abort trap: 6


Any idea why I'm getting this error, it appears that I am running the same python in both directories. This seems like an environment issue, but if it's not, please point me in the right direction. Thanks.







python anaconda nose






share|improve this question















share|improve this question













share|improve this question




share|improve this question








edited Mar 17 at 0:46









gdlmx

4,16511032




4,16511032










asked Mar 8 at 15:43









dylanjmdylanjm

824216




824216












  • Do you have to run tests via interpreter? Or can you use CLI utility? Because when you installed nose, the message says that The scripts nosetests and nosetests-2.7 are installed in '~/.local/bin' Can you try running nosetests command in the Documents/projects/neml?

    – bagljas
    Mar 14 at 15:45












  • @bagljas When I run nosetests I get the same error. In fact, my preferred way is going to be using nosetests

    – dylanjm
    Mar 14 at 16:00











  • I'm not on Mac, so I'm unable to simulate your problem. But it seems you are right, this might be environment related as per stackoverflow.com/a/38976341/7109330 and that answer links to this question stackoverflow.com/q/15678153/7109330 I also found this issue which might be similar to your problem github.com/GalSim-developers/GalSim/issues/546

    – bagljas
    Mar 15 at 8:40











  • Have you tried creating virtualenv and then installing nose within that virtualenv? Doing it this way, you can be sure that your libraries will work with the python interpreter you have in virtualenv.

    – bagljas
    Mar 15 at 8:43











  • I think the installation is not compatible with some other packages in your anaconda environment. It's better to clone the conda environment under your home folder and run conda install nose to install the nose from anaconda.

    – gdlmx
    Mar 17 at 0:50

















  • Do you have to run tests via interpreter? Or can you use CLI utility? Because when you installed nose, the message says that The scripts nosetests and nosetests-2.7 are installed in '~/.local/bin' Can you try running nosetests command in the Documents/projects/neml?

    – bagljas
    Mar 14 at 15:45












  • @bagljas When I run nosetests I get the same error. In fact, my preferred way is going to be using nosetests

    – dylanjm
    Mar 14 at 16:00











  • I'm not on Mac, so I'm unable to simulate your problem. But it seems you are right, this might be environment related as per stackoverflow.com/a/38976341/7109330 and that answer links to this question stackoverflow.com/q/15678153/7109330 I also found this issue which might be similar to your problem github.com/GalSim-developers/GalSim/issues/546

    – bagljas
    Mar 15 at 8:40











  • Have you tried creating virtualenv and then installing nose within that virtualenv? Doing it this way, you can be sure that your libraries will work with the python interpreter you have in virtualenv.

    – bagljas
    Mar 15 at 8:43











  • I think the installation is not compatible with some other packages in your anaconda environment. It's better to clone the conda environment under your home folder and run conda install nose to install the nose from anaconda.

    – gdlmx
    Mar 17 at 0:50
















Do you have to run tests via interpreter? Or can you use CLI utility? Because when you installed nose, the message says that The scripts nosetests and nosetests-2.7 are installed in '~/.local/bin' Can you try running nosetests command in the Documents/projects/neml?

– bagljas
Mar 14 at 15:45






Do you have to run tests via interpreter? Or can you use CLI utility? Because when you installed nose, the message says that The scripts nosetests and nosetests-2.7 are installed in '~/.local/bin' Can you try running nosetests command in the Documents/projects/neml?

– bagljas
Mar 14 at 15:45














@bagljas When I run nosetests I get the same error. In fact, my preferred way is going to be using nosetests

– dylanjm
Mar 14 at 16:00





@bagljas When I run nosetests I get the same error. In fact, my preferred way is going to be using nosetests

– dylanjm
Mar 14 at 16:00













I'm not on Mac, so I'm unable to simulate your problem. But it seems you are right, this might be environment related as per stackoverflow.com/a/38976341/7109330 and that answer links to this question stackoverflow.com/q/15678153/7109330 I also found this issue which might be similar to your problem github.com/GalSim-developers/GalSim/issues/546

– bagljas
Mar 15 at 8:40





I'm not on Mac, so I'm unable to simulate your problem. But it seems you are right, this might be environment related as per stackoverflow.com/a/38976341/7109330 and that answer links to this question stackoverflow.com/q/15678153/7109330 I also found this issue which might be similar to your problem github.com/GalSim-developers/GalSim/issues/546

– bagljas
Mar 15 at 8:40













Have you tried creating virtualenv and then installing nose within that virtualenv? Doing it this way, you can be sure that your libraries will work with the python interpreter you have in virtualenv.

– bagljas
Mar 15 at 8:43





Have you tried creating virtualenv and then installing nose within that virtualenv? Doing it this way, you can be sure that your libraries will work with the python interpreter you have in virtualenv.

– bagljas
Mar 15 at 8:43













I think the installation is not compatible with some other packages in your anaconda environment. It's better to clone the conda environment under your home folder and run conda install nose to install the nose from anaconda.

– gdlmx
Mar 17 at 0:50





I think the installation is not compatible with some other packages in your anaconda environment. It's better to clone the conda environment under your home folder and run conda install nose to install the nose from anaconda.

– gdlmx
Mar 17 at 0:50












0






active

oldest

votes












Your Answer






StackExchange.ifUsing("editor", function ()
StackExchange.using("externalEditor", function ()
StackExchange.using("snippets", function ()
StackExchange.snippets.init();
);
);
, "code-snippets");

StackExchange.ready(function()
var channelOptions =
tags: "".split(" "),
id: "1"
;
initTagRenderer("".split(" "), "".split(" "), channelOptions);

StackExchange.using("externalEditor", function()
// Have to fire editor after snippets, if snippets enabled
if (StackExchange.settings.snippets.snippetsEnabled)
StackExchange.using("snippets", function()
createEditor();
);

else
createEditor();

);

function createEditor()
StackExchange.prepareEditor(
heartbeatType: 'answer',
autoActivateHeartbeat: false,
convertImagesToLinks: true,
noModals: true,
showLowRepImageUploadWarning: true,
reputationToPostImages: 10,
bindNavPrevention: true,
postfix: "",
imageUploader:
brandingHtml: "Powered by u003ca class="icon-imgur-white" href="https://imgur.com/"u003eu003c/au003e",
contentPolicyHtml: "User contributions licensed under u003ca href="https://creativecommons.org/licenses/by-sa/3.0/"u003ecc by-sa 3.0 with attribution requiredu003c/au003e u003ca href="https://stackoverflow.com/legal/content-policy"u003e(content policy)u003c/au003e",
allowUrls: true
,
onDemand: true,
discardSelector: ".discard-answer"
,immediatelyShowMarkdownHelp:true
);



);













draft saved

draft discarded


















StackExchange.ready(
function ()
StackExchange.openid.initPostLogin('.new-post-login', 'https%3a%2f%2fstackoverflow.com%2fquestions%2f55066552%2ferror-when-trying-to-run-nosetests-in-certain-directory-pythreadstate-get-no%23new-answer', 'question_page');

);

Post as a guest















Required, but never shown

























0






active

oldest

votes








0






active

oldest

votes









active

oldest

votes






active

oldest

votes















draft saved

draft discarded
















































Thanks for contributing an answer to Stack Overflow!


  • Please be sure to answer the question. Provide details and share your research!

But avoid


  • Asking for help, clarification, or responding to other answers.

  • Making statements based on opinion; back them up with references or personal experience.

To learn more, see our tips on writing great answers.




draft saved


draft discarded














StackExchange.ready(
function ()
StackExchange.openid.initPostLogin('.new-post-login', 'https%3a%2f%2fstackoverflow.com%2fquestions%2f55066552%2ferror-when-trying-to-run-nosetests-in-certain-directory-pythreadstate-get-no%23new-answer', 'question_page');

);

Post as a guest















Required, but never shown





















































Required, but never shown














Required, but never shown












Required, but never shown







Required, but never shown

































Required, but never shown














Required, but never shown












Required, but never shown







Required, but never shown







Popular posts from this blog

Can't initialize raids on a new ASUS Prime B360M-A motherboard2019 Community Moderator ElectionSimilar to RAID config yet more like mirroring solution?Can't get motherboard serial numberWhy does the BIOS entry point start with a WBINVD instruction?UEFI performance Asus Maximus V Extreme

Identity Server 4 is not redirecting to Angular app after login2019 Community Moderator ElectionIdentity Server 4 and dockerIdentityserver implicit flow unauthorized_clientIdentityServer Hybrid Flow - Access Token is null after user successful loginIdentity Server to MVC client : Page Redirect After loginLogin with Steam OpenId(oidc-client-js)Identity Server 4+.NET Core 2.0 + IdentityIdentityServer4 post-login redirect not working in Edge browserCall to IdentityServer4 generates System.NullReferenceException: Object reference not set to an instance of an objectIdentityServer4 without HTTPS not workingHow to get Authorization code from identity server without login form

2005 Ahvaz unrest Contents Background Causes Casualties Aftermath See also References Navigation menue"At Least 10 Are Killed by Bombs in Iran""Iran"Archived"Arab-Iranians in Iran to make April 15 'Day of Fury'"State of Mind, State of Order: Reactions to Ethnic Unrest in the Islamic Republic of Iran.10.1111/j.1754-9469.2008.00028.x"Iran hangs Arab separatists"Iran Overview from ArchivedConstitution of the Islamic Republic of Iran"Tehran puzzled by forged 'riots' letter""Iran and its minorities: Down in the second class""Iran: Handling Of Ahvaz Unrest Could End With Televised Confessions""Bombings Rock Iran Ahead of Election""Five die in Iran ethnic clashes""Iran: Need for restraint as anniversary of unrest in Khuzestan approaches"Archived"Iranian Sunni protesters killed in clashes with security forces"Archived